Pseudomonas aeruginosa Carb01 63

Strain Overview
Organism Name Pseudomonas aeruginosa Carb01 63
Species Pseudomonas aeruginosa
Strain Carb01 63
Description/Title Pseudomonas aeruginosa isolated from hospital patient
Annotated Genes 7070
Partial Genes 63
Host Information
Geographic Location
Location Name Netherlands:Rotterdam
Latitude/Longitude 51.55 N 4.30 E
Sample Provider
Name Bart Kraak
E-mail KraakW@maasstadziekenhuis.nl
Institution Maasstad Hospital
Date Collected 2012-04-16

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 111
ppsA
4		 trpE
3		 guaA
5		 mutL
4		 nuoD
4		 acsA
17		 aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000981825.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03389320
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa strain Carb01 63, complete genome.

Annotated Features

Feature Count
gene 7036
CDS 6958
tRNA 65
pseudo 34
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3044
Cytoplasmic Membrane 1463
Periplasmic 180
Outer Membrane 176
Extracellular 80
Unknown 1861
Unknown (This protein may have multiple localization sites) 154

Replicons

Name Length GC
Pseudomonas aeruginosa strain Carb01 63, complete genome. 7497593 bp 65.6%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

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TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF