Pseudomonas aeruginosa FRD1

Strain Overview
Organism Name Pseudomonas aeruginosa FRD1 - Assembly GCF_000950725.1
Species Pseudomonas aeruginosa
Strain FRD1
Description/Title Pathogen: clinical or host-associated sample from Pseudomonas aeruginosa
Annotated Genes 6188
Partial Genes 65
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name USA
Isolation Source sputum
Sample Provider
Name DI WANG
E-mail wangdiwwdd@163.com
Institution Institute of microbiology, Chinese Academy of Sciences
Date Collected 1981

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 111
mutL
4		 ppsA
4		 nuoD
4		 acsA
17		 guaA
5		 aroE
5		 trpE
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000950725.1
Assembly Status latest
Scaffolds
Contigs 31
Contig N50 566624
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03342417
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6148
CDS 6082
tRNA 61
pseudo 40
rRNA 4
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2765
Cytoplasmic Membrane 1368
Periplasmic 177
Outer Membrane 166
Extracellular 72
Unknown 1380
Unknown (This protein may have multiple localization sites) 154

Replicons

31 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF