| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa MRSN 20176 - Assembly GCF_000937465.2 |
| Species | Pseudomonas aeruginosa |
| Strain | MRSN 20176 |
| Description/Title | Pseudomonas aeruginosa MRSN20176: clinical isolate carrying the blaVIM-11 gene |
| Annotated Genes | 6304 |
| Partial Genes | 89 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | missing |
| Geographic Location | |
|---|---|
| Location Name | Afghanistan |
| Isolation Source | Surveillance swab |
| Latitude/Longitude | missing |
| Sample Provider | |
|---|---|
| Name | Erik Snesrud |
| esnesrud@gmail.com | |
| Institution | Walter Reed Army Institute of Research |
| Date Collected | 29-Dec-2013 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 316 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 96 |
| Contig N50 | 232106 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03316892 |
| NCBI Taxonomy ID | 287 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6274 |
| CDS | 6200 |
| tRNA | 58 |
| pseudo | 30 |
| ncRNA | 3 |
| rRNA | 3 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2749 |
| Cytoplasmic Membrane | 1363 |
| Periplasmic | 181 |
| Outer Membrane | 163 |
| Extracellular | 68 |
| Unknown | 1522 |
| Unknown (This protein may have multiple localization sites) | 154 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |