Pseudomonas aeruginosa NCGM1984

Strain Overview
Organism Name Pseudomonas aeruginosa NCGM1984
Species Pseudomonas aeruginosa
Strain NCGM1984
Description/Title MIGS Cultured Bacterial/Archaeal sample from Pseudomonas aeruginosa
Annotated Genes 6399
Partial Genes 50
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Japan: Aomori prefecture
Isolation Source catheter
Latitude/Longitude NA
Environmental Feature (?) NA
Environmental Material (?) Urinary catheter
Sample Provider
Name
E-mail
Institution National Center for Global Health and Medicine
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 235
trpE
4		 ppsA
2		 nuoD
1		 mutL
13		 acsA
38		 guaA
3		 aroE
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000829255.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMD00019082
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1984.

Annotated Features

Feature Count
gene 6381
CDS 6299
tRNA 69
pseudo 18
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2799
Unknown 1591
Cytoplasmic Membrane 1340
Periplasmic 175
Outer Membrane 164
Unknown (This protein may have multiple localization sites) 156
Extracellular 74

Replicons

Name Length GC
Pseudomonas aeruginosa DNA, complete genome, strain: NCGM 1984. 6850954 bp 66.0%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF