| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_6_a1 |
| Species | Pseudomonas aeruginosa |
| Strain | LES_CF_sputum_CF03_contigs_6_a1 |
| Description/Title | Non-tumor DNA sample from BLOOD of a human male participant in the dbGaP study "ICPCG Genome Wide Association Study of Familial Prostate Cancer" |
| Annotated Genes | 6006 |
| Partial Genes | 58 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | cystic fibrosis |
| Geographic Location | |
|---|---|
| Location Name | United Kingdom |
| Isolation Source | sputum |
| Latitude/Longitude | 53.4 N 3 W |
| Sample Provider | |
|---|---|
| Name | |
| Institution | UNIVERSITY OF LIVERPOOL |
| Date Collected | 2009-01-20 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 146 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 62 |
| Contig N50 | 417552 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMEA2733011 |
| NCBI Taxonomy ID | 9606 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5970 |
| CDS | 5907 |
| tRNA | 58 |
| pseudo | 36 |
| rRNA | 3 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2672 |
| Cytoplasmic Membrane | 1337 |
| Periplasmic | 166 |
| Outer Membrane | 157 |
| Extracellular | 70 |
| Unknown | 1356 |
| Unknown (This protein may have multiple localization sites) | 149 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |