Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_33_a1

Strain Overview
Organism Name Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_33_a1
Species Pseudomonas aeruginosa
Strain LES_CF_sputum_CF03_contigs_33_a1
Description/Title Transcriptome sequencing of Drosophila melanogaster hybrid F1r reared in 23 degree
Annotated Genes 6009
Partial Genes 59
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name United Kingdom
Isolation Source sputum
Latitude/Longitude 53.4 N 3 W
Sample Provider
Name Jun Chen
E-mail cjnankai@gmail.com
Institution UNIVERSITY OF LIVERPOOL
Date Collected 2009-01-20

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 146
acsA
6		 ppsA
23		 trpE
1		 aroE
5		 nuoD
4		 guaA
11		 mutL
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000824285.1
Assembly Status latest
Scaffolds
Contigs 63
Contig N50 388934
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMEA2732181
NCBI Taxonomy ID 7227
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5973
CDS 5910
tRNA 58
pseudo 36
rRNA 3
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 2671
Unknown 1360
Cytoplasmic Membrane 1337
Periplasmic 166
Outer Membrane 157
Unknown (This protein may have multiple localization sites) 149
Extracellular 70

Replicons

63 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF