Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_32_a1

Strain Overview
Organism Name Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_32_a1
Species Pseudomonas aeruginosa
Strain LES_CF_sputum_CF03_contigs_32_a1
Description/Title Transcriptome sequencing of Drosophila melanogaster hybrid F1r reared in 13 degree
Annotated Genes 6008
Partial Genes 55
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name United Kingdom
Isolation Source sputum
Latitude/Longitude 53.4 N 3 W
Sample Provider
Name Jun Chen
E-mail cjnankai@gmail.com
Institution UNIVERSITY OF LIVERPOOL
Date Collected 2009-01-20

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 146
acsA
6		 guaA
11		 nuoD
4		 trpE
1		 ppsA
23		 mutL
3		 aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000824265.1
Assembly Status latest
Scaffolds
Contigs 65
Contig N50 389147
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMEA2732180
NCBI Taxonomy ID 7227
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5972
CDS 5909
tRNA 58
pseudo 36
rRNA 3
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 2672
Cytoplasmic Membrane 1337
Periplasmic 166
Outer Membrane 157
Extracellular 70
Unknown 1358
Unknown (This protein may have multiple localization sites) 149

Replicons

65 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF