Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_11_a1

Strain Overview
Organism Name Pseudomonas aeruginosa LES_CF_sputum_CF03_contigs_11_a1
Species Pseudomonas aeruginosa
Strain LES_CF_sputum_CF03_contigs_11_a1
Description/Title Human sample from Homo sapiens
Annotated Genes 6020
Partial Genes 52
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name United Kingdom
Isolation Source sputum
Latitude/Longitude 53.4 N 3 W
Sample Provider
Name Jae Hoon Lee
E-mail jaehoon115@hotmail.com
Institution UNIVERSITY OF LIVERPOOL
Date Collected 2009-01-20

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 146
ppsA
23		 acsA
6		 nuoD
4		 mutL
3		 guaA
11		 trpE
1		 aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000823965.1
Assembly Status latest
Scaffolds
Contigs 58
Contig N50 389187
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMEA2732149
NCBI Taxonomy ID 9606
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5985
CDS 5922
tRNA 58
pseudo 35
rRNA 3
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 2678
Cytoplasmic Membrane 1342
Periplasmic 166
Outer Membrane 157
Extracellular 69
Unknown 1361
Unknown (This protein may have multiple localization sites) 149

Replicons

58 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF