Pseudomonas aeruginosa AZPAE14379

Strain Overview
Organism Name Pseudomonas aeruginosa AZPAE14379
Species Pseudomonas aeruginosa
Strain AZPAE14379
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 5757
Partial Genes 39
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease intra-abdominal tract infection
Geographic Location
Location Name Germany: Heidelberg
Sample Provider
Name Veronica Kos
E-mail veronica.kos@astrazeneca.com
Institution AstraZeneca
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 242
acsA
28		 aroE
5		 ppsA
15		 mutL
11		 trpE
44		 guaA
5		 nuoD
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000795925.1
Assembly Status latest
Scaffolds
Contigs 51
Contig N50 362061
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03105435
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5744
CDS 5684
tRNA 55
pseudo 13
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2592
Cytoplasmic Membrane 1308
Unknown 1231
Periplasmic 170
Outer Membrane 160
Unknown (This protein may have multiple localization sites) 155
Extracellular 68

Replicons

44 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF