Pseudomonas aeruginosa AZPAE14840

Strain Overview
Organism Name Pseudomonas aeruginosa AZPAE14840
Species Pseudomonas aeruginosa
Strain AZPAE14840
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 6586
Partial Genes 96
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease urinary tract infection
Geographic Location
Location Name China: Beijing
Sample Provider
Name Veronica Kos
E-mail veronica.kos@astrazeneca.com
Institution AstraZeneca
Date Collected 2006

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1960
acsA
16		 nuoD
1		 ppsA
4		 mutL
3		 trpE
7		 guaA
77		 aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000789555.1
Assembly Status latest
Scaffolds 76
Contigs 86
Contig N50 225469
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03105541
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6557
CDS 6494
tRNA 57
pseudo 29
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2889
Cytoplasmic Membrane 1382
Periplasmic 173
Outer Membrane 174
Extracellular 73
Unknown 1645
Unknown (This protein may have multiple localization sites) 158

Replicons

76 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF