Pseudomonas aeruginosa PSE305

Strain Overview
Organism Name Pseudomonas aeruginosa PSE305
Species Pseudomonas aeruginosa
Strain PSE305
Description/Title Non-tumor DNA sample from Blood of a human male participant in the dbGaP study "Sequencing of Targeted Genomic Regions Associated with Smoking"
Annotated Genes 6299
Partial Genes 149
Host Information
Host Species Taxonomic Name Ovis aries
Host Species Common Name sheep
Host Species Taxonomy ID 9940
Host Species Disease mastitis
Geographic Location
Sample Provider
Name
E-mail
Institution IGH
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 244
acsA
17		 ppsA
4		 mutL
3		 trpE
7		 guaA
12		 nuoD
14		 aroE
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000750905.1
Assembly Status latest
Scaffolds 1
Contigs 144
Contig N50 109580
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMEA3139100
NCBI Taxonomy ID 9606
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa strain PSE305.

Annotated Features

Feature Count
gene 6248
CDS 6159
tRNA 61
pseudo 51
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2771
Cytoplasmic Membrane 1360
Periplasmic 172
Outer Membrane 164
Extracellular 75
Unknown 1474
Unknown (This protein may have multiple localization sites) 143

Replicons

Name Length GC
Pseudomonas aeruginosa strain PSE305. 6762448 bp 65.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF