Pseudomonas aeruginosa LESlike1

Strain Overview
Organism Name Pseudomonas aeruginosa LESlike1
Species Pseudomonas aeruginosa
Strain LESlike1
Description/Title Sample from Pseudomonas aeruginosa LESlike1
Annotated Genes 6032
Partial Genes 31
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Canada:Ottawa
Isolation Source CF isolate
Sample Provider
Name
E-mail
Institution University Laval, Institut de Biologie Integrative et des Systemes (Ibis)
Date Collected 2005

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 146
acsA
6		 guaA
11		 mutL
3		 trpE
1		 ppsA
23		 aroE
5		 nuoD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000583975.1
Assembly Status latest
Scaffolds 1
Contigs 5
Contig N50 1516505
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03081519
NCBI Taxonomy ID 1408274
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa LESlike1 sequence.

Annotated Features

Feature Count
gene 5969
CDS 5892
tRNA 64
pseudo 63
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2670
Cytoplasmic Membrane 1333
Periplasmic 162
Outer Membrane 157
Extracellular 71
Unknown 1352
Unknown (This protein may have multiple localization sites) 147

Replicons

Name Length GC
Pseudomonas aeruginosa LESlike1 sequence. 6509070 bp 66.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF