| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas syringae UB0390 |
| Species | Pseudomonas syringae |
| Strain | UB0390 |
| Description/Title | Microbe sample from Pseudomonas syringae |
| Annotated Genes | 4710 |
| Partial Genes | 78 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | France: Le Lauzet-Ubaye |
| Isolation Source | river water |
| Sample Provider | |
|---|---|
| Name | David Baltrus |
| baltrus@email.arizona.edu | |
| Institution | University of Arizona |
| Date Collected | 31-May-2007 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 80 |
| Contig N50 | 182483 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02929202 |
| NCBI Taxonomy ID | 317 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 4682 |
| CDS | 4623 |
| tRNA | 54 |
| pseudo | 28 |
| rRNA | 4 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2053 |
| Cytoplasmic Membrane | 1092 |
| Unknown | 1061 |
| Periplasmic | 154 |
| Unknown (This protein may have multiple localization sites) | 109 |
| Outer Membrane | 100 |
| Extracellular | 54 |
| Flagellar | 17 |
| Fimbrial | 5 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |