Pseudomonas syringae pv. syringae B301D-R

Strain Overview
Organism Name Pseudomonas syringae pv. syringae B301D-R
Species Pseudomonas syringae pv. syringae
Strain B301D-R
Description/Title Pseudomonas syringae pv. syringae B301D-R
Annotated Genes 5205
Partial Genes 105
Host Information
Host Species Taxonomic Name Pyrus communis
Host Species Common Name pear
Host Species Taxonomy ID 23211
Geographic Location
Location Name United Kingdom: England
Isolation Source diseased pear flower
Sample Provider
Name Alexey Dudnik
E-mail alexey.dudnik@botinst.uzh.ch
Institution Institute of Plant Biology, University of Zurich
Date Collected 1969

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000585725.1
Assembly Status latest
Scaffolds
Contigs 81
Contig N50 169605
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02585144
NCBI Taxonomy ID 1365665
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5165
CDS 5095
tRNA 57
pseudo 40
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2214
Unknown 1234
Cytoplasmic Membrane 1181
Periplasmic 164
Unknown (This protein may have multiple localization sites) 129
Outer Membrane 109
Extracellular 64
Flagellar 18
Fimbrial 5
T3SS 2

Replicons

81 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF