Pseudomonas sp. Eur1 9.41

Strain Overview
Organism Name Pseudomonas sp. Eur1 9.41
Species Pseudomonas sp.
Strain Eur1 9.41
Description/Title Pseudomonas sp. Eur1 9.41
Annotated Genes 5587
Partial Genes 90
Host Information
Geographic Location
Environmental Feature (?) missing
Environmental Material (?) missing
Sample Provider
Name
E-mail
Institution DOE Joint Genome Institute
Date Collected not collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000744215.1
Assembly Status latest
Scaffolds
Contigs 2
Contig N50 6319460
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02744049
NCBI Taxonomy ID 378534
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5551
CDS 5464
tRNA 67
pseudo 36
rRNA 19
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2357
Unknown 1310
Cytoplasmic Membrane 1279
Periplasmic 185
Outer Membrane 148
Unknown (This protein may have multiple localization sites) 121
Extracellular 64
Flagellar 18
Fimbrial 11
T3SS 2

Replicons

Name Length GC
Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_1_quiver.1_C, whole genome shotgun sequence. 11622 bp 49.8%
Replicon details
Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence. 6319460 bp 60.0%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF