Pseudomonas putida S13.1.2

Strain Overview
Organism Name Pseudomonas putida S13.1.2 - Assembly GCF_000498395.2
Species Pseudomonas putida
Strain S13.1.2
Description/Title Microbe sample from Pseudomonas putida S13.1.2
Annotated Genes 5871
Partial Genes 51
Host Information
Geographic Location
Location Name France
Isolation Source rhizosphere soil
Sample Provider
Name Teik Min Chong
E-mail cluster1986@hotmail.com
Institution University of Malaya
Date Collected 2008

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida 63
recA
15		 nuoC
47		 gyrB
49		 argS
40		 ileS
28		 ppsA
12		 rpoB
12		 rpoD
25
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000498395.2
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02639951
NCBI Taxonomy ID 1384061
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida S13.1.2, complete genome.

Annotated Features

Feature Count
gene 5818
CDS 5720
tRNA 75
pseudo 53
rRNA 22
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2571
Cytoplasmic Membrane 1293
Periplasmic 185
Outer Membrane 180
Extracellular 48
Unknown 1288
Unknown (This protein may have multiple localization sites) 155

Replicons

Name Length GC
Pseudomonas putida S13.1.2, complete genome. 6621848 bp 62.3%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF