| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas fluorescens AU6308 |
| Species | Pseudomonas fluorescens |
| Strain | AU6308 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas fluorescens |
| Annotated Genes | 5473 |
| Partial Genes | 96 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | cystic fibrosis |
| Geographic Location | |
|---|---|
| Location Name | USA |
| Latitude/Longitude | 47.6097 N 122.3331 W |
| Environmental Feature (?) | not applicable |
| Environmental Material (?) | not applicable |
| Sample Provider | |
|---|---|
| Name | Brittan Scales |
| britstar@umich.edu | |
| Institution | University of Michigan, Ann Arbor |
| Date Collected | 28-Jul-2003 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pfluorescens | - |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 86 |
| Contig N50 | 185300 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03092886 |
| NCBI Taxonomy ID | 294 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5445 |
| CDS | 5371 |
| tRNA | 58 |
| pseudo | 28 |
| rRNA | 10 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2336 |
| Cytoplasmic Membrane | 1243 |
| Periplasmic | 173 |
| Outer Membrane | 149 |
| Extracellular | 53 |
| Unknown | 1296 |
| Unknown (This protein may have multiple localization sites) | 121 |
| Flagellar | 18 |
| Fimbrial | 8 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |