| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas fluorescens EGD-AQ6 |
| Species | Pseudomonas fluorescens |
| Strain | EGD-AQ6 |
| Description/Title | Sample from Pseudomonas fluorescens EGD-AQ6 |
| Annotated Genes | 5597 |
| Partial Genes | 92 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | India: MS |
| Isolation Source | sewage sludge |
| Sample Provider | |
|---|---|
| Name | |
| Institution | |
| Date Collected | 03-Oct-2005 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pfluorescens | 81 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 58 |
| Contig N50 | 273104 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02469684 |
| NCBI Taxonomy ID | 1390371 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5582 |
| CDS | 5522 |
| tRNA | 54 |
| pseudo | 15 |
| rRNA | 4 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2397 |
| Cytoplasmic Membrane | 1311 |
| Unknown | 1252 |
| Periplasmic | 207 |
| Outer Membrane | 146 |
| Unknown (This protein may have multiple localization sites) | 143 |
| Extracellular | 66 |
| Flagellar | 19 |
| Fimbrial | 6 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |