| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa NCAIM B.001380 |
| Species | Pseudomonas aeruginosa |
| Strain | NCAIM B.001380 |
| Description/Title | Sample from Pseudomonas aeruginosa NCAIM B.001380 |
| Annotated Genes | 6499 |
| Partial Genes | 64 |
| Host Information |
|---|
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| Institution | DOE Joint Genome Institute |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 155 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 15 |
| Contigs | 15 |
| Contig N50 | 1919834 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02743347 |
| NCBI Taxonomy ID | 1118159 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6361 |
| CDS | 6279 |
| pseudo | 138 |
| tRNA | 67 |
| rRNA | 14 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2643 |
| Cytoplasmic Membrane | 1313 |
| Periplasmic | 165 |
| Outer Membrane | 144 |
| Extracellular | 69 |
| Unknown | 1429 |
| Unknown (This protein may have multiple localization sites) | 142 |
| Flagellar | 17 |
| Fimbrial | 8 |
| T3SS | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |