Pseudomonas aeruginosa VRFPA04

Strain Overview
Organism Name Pseudomonas aeruginosa VRFPA04 - Assembly GCF_000473745.2
Species Pseudomonas aeruginosa
Strain VRFPA04
Description/Title Sample from Pseudomonas aeruginosa VRFPA04
Annotated Genes 6308
Partial Genes 400
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease keratitis
Geographic Location
Location Name India: ChennaiIndia
Isolation Source corneal button
Sample Provider
Name
E-mail
Institution
Date Collected Jun-13

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa -
acsA
32,32		 trpE
25		 nuoD
1		 mutL
13		 guaA
24		 aroE
13		 ppsA
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000473745.2
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6818030
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02472098
NCBI Taxonomy ID 1400868
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas aeruginosa VRFPA04, complete genome.

Annotated Features

Feature Count
gene 6240
CDS 6143
tRNA 69
pseudo 68
rRNA 27
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2742
Unknown 1434
Cytoplasmic Membrane 1409
Outer Membrane 175
Periplasmic 172
Unknown (This protein may have multiple localization sites) 139
Extracellular 72

Replicons

Name Length GC
Pseudomonas aeruginosa VRFPA04, complete genome. 6818030 bp 66.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF