Pseudomonas aeruginosa Stone 130

Strain Overview
Organism Name Pseudomonas aeruginosa Stone 130
Species Pseudomonas aeruginosa
Strain Stone 130
Description/Title Generic sample from Pseudomonas aeruginosa str. Stone 130
Annotated Genes 7112
Partial Genes 47
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Tissue Sampled skin
Geographic Location
Location Name USA: Atlanta, Georgia
Isolation Source burn
Sample Provider
Name
E-mail sra_submissions@broadinstitute.org
Institution Broad Institute
Date Collected 1971

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 348
mutL
3		 nuoD
3		 trpE
7		 guaA
11		 ppsA
3		 acsA
22		 aroE
20
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000478465.2
Assembly Status latest
Scaffolds 6
Contigs 47
Contig N50 546632
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN01779569
NCBI Taxonomy ID 1125697
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7110
CDS 7038
tRNA 64
rRNA 8
pseudo 2

Subcellular Localization

Localization Count
Cytoplasmic 3086
Unknown 1879
Cytoplasmic Membrane 1487
Periplasmic 176
Outer Membrane 176
Unknown (This protein may have multiple localization sites) 149
Extracellular 85
Flagellar 17
Fimbrial 7
T3SS 4

Replicons

6 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF