Pseudomonas putida S12

Strain Overview
Organism Name Pseudomonas putida S12 - Assembly GCF_000495455.2
Species Pseudomonas putida
Strain S12
Description/Title Sample from Pseudomonas putida S12
Annotated Genes 5806
Partial Genes 86
Host Information
Geographic Location
Location Name Netherlands
Isolation Source soil
Sample Provider
Name
E-mail
Institution
Date Collected 1989

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida -
gyrB
45		 ppsA
8		 recA
4		 rpoD
2		 argS
12		 ileS
6		 rpoB
1		 nuoC
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000495455.2
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02470872
NCBI Taxonomy ID 1215087
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida S12, complete genome.
Pseudomonas putida S12 plasmid pTTS12, complete sequence.

Annotated Features

Feature Count
gene 5773
CDS 5693
tRNA 61
pseudo 33
rRNA 18
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2561
Cytoplasmic Membrane 1264
Periplasmic 163
Outer Membrane 147
Extracellular 37
Unknown 1379
Unknown (This protein may have multiple localization sites) 142

Replicons

Name Length GC
Pseudomonas putida S12, complete genome. 5798534 bp 61.8%
Replicon details
Pseudomonas putida S12 plasmid pTTS12, complete sequence. 583900 bp 57.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF