Pseudomonas sp. TKP

Strain Overview
Organism Name Pseudomonas sp. TKP
Species Pseudomonas sp.
Strain TKP
Description/Title Pseudomonas sp. TKP
Annotated Genes 6413
Partial Genes
Host Information
Geographic Location
Location Name Japan
Isolation Source HCH contaminated soil
Sample Provider
Name Yoshiyuki Ohtsubo
E-mail yohtsubo@ige.tohoku.ac.jp
Institution Tohoku University
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000508205.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02389528
NCBI Taxonomy ID 1415630
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas sp. TKP, complete genome.

Annotated Features

Feature Count
gene 6381
CDS 6297
tRNA 67
pseudo 32
rRNA 16
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2671
Cytoplasmic Membrane 1518
Periplasmic 228
Outer Membrane 164
Extracellular 62
Unknown 1517
Unknown (This protein may have multiple localization sites) 137
Flagellar 21
Fimbrial 8
T3SS 2

Replicons

Name Length GC
Pseudomonas sp. TKP, complete genome. 7012672 bp 60.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF