Pseudomonas aeruginosa AZPAE14880

Strain Overview
Organism Name Pseudomonas aeruginosa AZPAE14880
Species Pseudomonas aeruginosa
Strain AZPAE14880
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 6442
Partial Genes 105
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease respiratory tract infection
Geographic Location
Location Name Spain: Santander
Sample Provider
Name Veronica Kos
E-mail veronica.kos@astrazeneca.com
Institution AstraZeneca
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 175
mutL
3
ppsA
14
guaA
5
trpE
19
acsA
28
nuoD
3
aroE
22
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 84
Contigs 97
Contig N50 225454
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03105579
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6427
CDS 6360
tRNA 57
pseudo 15
rRNA 3
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 2816
Cytoplasmic Membrane 1398
Periplasmic 170
Outer Membrane 172
Extracellular 70
Unknown 1579
Unknown (This protein may have multiple localization sites) 155
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

84 replicons associated with this assembly

Antibiotic Resistance/Susceptibility

Antibiotic Phenotype PMID
meropenem susceptible 25367914
levofloxacin resistant 25367914
amikacin susceptible 25367914
colistin susceptible 25367914

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF