Strain Overview | |
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Organism Name | Pseudomonas aeruginosa MTB-1 |
Species | Pseudomonas aeruginosa |
Strain | MTB-1 |
Description/Title | Pseudomonas aeruginosa MTB-1 |
Annotated Genes | 6186 |
Partial Genes |
Host Information |
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Geographic Location | |
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Location Name | India |
Isolation Source | t-HCH contaminated soil |
Sample Provider | |
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Name | Yoshiyuki Ohtsubo |
yohtsubo@ige.tohoku.ac.jp | |
Institution | Tohoku University |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 2689 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | |
Assembly Status | latest |
Scaffolds | 1 |
Contigs | |
Contig N50 | 6580038 |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02389526 |
NCBI Taxonomy ID | 1415629 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | ||
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Pseudomonas aeruginosa MTB-1, complete genome. |
Feature | Count |
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gene | 6155 |
CDS | 6078 |
tRNA | 64 |
pseudo | 31 |
rRNA | 12 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2708 |
Unknown | 1441 |
Cytoplasmic Membrane | 1353 |
Periplasmic | 173 |
Outer Membrane | 169 |
Unknown (This protein may have multiple localization sites) | 155 |
Extracellular | 79 |
Flagellar | 17 |
Fimbrial | 9 |
T3SS | 4 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas aeruginosa MTB-1, complete genome. | 6580038 bp | 66.2% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |