Pseudomonas aeruginosa MTB-1

Strain Overview
Organism Name Pseudomonas aeruginosa MTB-1
Species Pseudomonas aeruginosa
Strain MTB-1
Description/Title Pseudomonas aeruginosa MTB-1
Annotated Genes 6186
Partial Genes
Host Information
Geographic Location
Location Name India
Isolation Source t-HCH contaminated soil
Sample Provider
Name Yoshiyuki Ohtsubo
E-mail yohtsubo@ige.tohoku.ac.jp
Institution Tohoku University
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 2689
mutL
5
ppsA
11
guaA
3
nuoD
1
acsA
5
aroE
8
trpE
3
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 6580038
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02389526
NCBI Taxonomy ID 1415629
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas aeruginosa MTB-1, complete genome.

Annotated Features

Feature Count
gene 6155
CDS 6078
tRNA 64
pseudo 31
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2708
Unknown 1441
Cytoplasmic Membrane 1353
Periplasmic 173
Outer Membrane 169
Unknown (This protein may have multiple localization sites) 155
Extracellular 79
Flagellar 17
Fimbrial 9
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa MTB-1, complete genome. 6580038 bp 66.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF