Pseudomonas aeruginosa PAG

Strain Overview
Organism Name Pseudomonas aeruginosa PAG
Species Pseudomonas aeruginosa
Strain PAG
Description/Title Microbe sample from Pseudomonas aeruginosa
Annotated Genes 6332
Partial Genes 28
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Isolation Source blood
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 155
guaA
36		 mutL
3		 aroE
5		 nuoD
3		 acsA
28		 ppsA
13		 trpE
7
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000743405.1
Assembly Status latest
Scaffolds 1
Contigs 10
Contig N50 6029012
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02870863
NCBI Taxonomy ID 287
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6305
CDS 6227
tRNA 65
pseudo 27
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2765
Cytoplasmic Membrane 1400
Periplasmic 172
Outer Membrane 161
Extracellular 75
Unknown 1498
Unknown (This protein may have multiple localization sites) 156
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

Name Length GC
Pseudomonas aeruginosa strain PAG scaffold1, whole genome shotgun sequence. 6820284 bp 66.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF