Pseudomonas aeruginosa BWH049

Strain Overview
Organism Name Pseudomonas aeruginosa BWH049
Species Pseudomonas aeruginosa
Strain BWH049
Description/Title Generic sample from Pseudomonas aeruginosa BWH049
Annotated Genes 6106
Partial Genes 60
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 10/1/2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 1076
aroE
4		 mutL
62		 guaA
57		 acsA
5		 ppsA
1		 nuoD
1		 trpE
26
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629605.1
Assembly Status latest
Scaffolds 11
Contigs 22
Contig N50 659935
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02402433
NCBI Taxonomy ID 1418235
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6084
CDS 5999
tRNA 67
pseudo 22
rRNA 17
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2717
Cytoplasmic Membrane 1354
Periplasmic 175
Outer Membrane 174
Extracellular 70
Unknown 1361
Unknown (This protein may have multiple localization sites) 148
Flagellar 17
Fimbrial 5
T3SS 4

Replicons

11 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF