Pseudomonas aeruginosa BWH050

Strain Overview
Organism Name Pseudomonas aeruginosa BWH050
Species Pseudomonas aeruginosa
Strain BWH050
Description/Title Generic sample from Pseudomonas aeruginosa BWH050
Annotated Genes 6064
Partial Genes 56
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 23-Sep-2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 313
nuoD
8		 mutL
6		 aroE
8		 guaA
7		 trpE
40		 acsA
47		 ppsA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629585.1
Assembly Status latest
Scaffolds 9
Contigs 16
Contig N50 662810
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02402434
NCBI Taxonomy ID 1418236
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6046
CDS 5979
tRNA 59
pseudo 18
rRNA 7
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2718
Cytoplasmic Membrane 1341
Periplasmic 176
Outer Membrane 165
Extracellular 76
Unknown 1347
Unknown (This protein may have multiple localization sites) 156
Flagellar 17
Fimbrial 5
T3SS 4

Replicons

9 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF