Pseudomonas aeruginosa PS75

Strain Overview
Organism Name Pseudomonas aeruginosa PS75
Species Pseudomonas aeruginosa
Strain PS75
Description/Title Generic sample from Pseudomonas aeruginosa PS75
Annotated Genes 5828
Partial Genes 43
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 2728
acsA
11		 guaA
3		 aroE
5		 ppsA
20		 nuoD
8		 mutL
3		 trpE
9
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629365.1
Assembly Status latest
Scaffolds 7
Contigs 22
Contig N50 790249
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02402445
NCBI Taxonomy ID 1418247
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5812
CDS 5737
tRNA 63
pseudo 16
rRNA 11
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2624
Cytoplasmic Membrane 1300
Unknown 1253
Periplasmic 171
Outer Membrane 160
Unknown (This protein may have multiple localization sites) 158
Extracellular 71
Flagellar 17
Fimbrial 4
T3SS 4

Replicons

7 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF