Pseudomonas aeruginosa PAO1-GFP

Strain Overview
Organism Name Pseudomonas aeruginosa PAO1-GFP
Species Pseudomonas aeruginosa
Strain PAO1-GFP
Description/Title Generic sample from Pseudomonas aeruginosa PAO1-GFP
Annotated Genes 5751
Partial Genes 28
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 549
nuoD
4		 mutL
3		 guaA
12		 ppsA
1		 trpE
7		 aroE
5		 acsA
7
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629345.1
Assembly Status latest
Scaffolds 6
Contigs 22
Contig N50 659523
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02402446
NCBI Taxonomy ID 1418248
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5745
CDS 5675
tRNA 59
rRNA 10
pseudo 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2604
Cytoplasmic Membrane 1309
Periplasmic 169
Outer Membrane 171
Extracellular 72
Unknown 1206
Unknown (This protein may have multiple localization sites) 144
Flagellar 17
Fimbrial 5
T3SS 4

Replicons

6 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF