Pseudomonas aeruginosa BWH030

Strain Overview
Organism Name Pseudomonas aeruginosa BWH030
Species Pseudomonas aeruginosa
Strain BWH030
Description/Title Sample from Pseudomonas aeruginosa BWH030
Annotated Genes 5948
Partial Genes 88
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: Brigham and Women's Hospital
Isolation Source urine
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 3/1/2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 235
trpE
4		 nuoD
1		 ppsA
2		 aroE
11		 guaA
3		 mutL
13		 acsA
38
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629125.1
Assembly Status latest
Scaffolds 64
Contigs 66
Contig N50 276777
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584696
NCBI Taxonomy ID 1447538
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5931
CDS 5853
tRNA 64
pseudo 17
rRNA 13
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2672
Cytoplasmic Membrane 1314
Periplasmic 173
Outer Membrane 171
Extracellular 71
Unknown 1304
Unknown (This protein may have multiple localization sites) 148
Flagellar 17
Fimbrial 5
T3SS 4

Replicons

64 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF