Pseudomonas aeruginosa BWH031

Strain Overview
Organism Name Pseudomonas aeruginosa BWH031 - Assembly GCF_000629105.1
Species Pseudomonas aeruginosa
Strain BWH031
Description/Title Sample from Pseudomonas aeruginosa BWH031
Annotated Genes 6289
Partial Genes 114
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: Boston
Isolation Source sputum
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 3/1/2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 845
ppsA
4		 acsA
11		 guaA
1		 trpE
7		 aroE
5		 mutL
7		 nuoD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629105.1
Assembly Status latest
Scaffolds 69
Contigs 71
Contig N50 186789
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584697
NCBI Taxonomy ID 1447539
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6271
CDS 6194
tRNA 66
pseudo 18
rRNA 10
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2781
Unknown 1445
Cytoplasmic Membrane 1403
Periplasmic 171
Outer Membrane 167
Unknown (This protein may have multiple localization sites) 153
Extracellular 74
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

69 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF