Pseudomonas aeruginosa BWH035

Strain Overview
Organism Name Pseudomonas aeruginosa BWH035
Species Pseudomonas aeruginosa
Strain BWH035
Description/Title Sample from Pseudomonas aeruginosa BWH035
Annotated Genes 6525
Partial Genes 122
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA: Boston
Isolation Source right ear
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 3/1/2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 959
trpE
19		 aroE
5		 mutL
7		 ppsA
70		 acsA
6		 nuoD
3		 guaA
11
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000629045.1
Assembly Status latest
Scaffolds 82
Contigs 84
Contig N50 184163
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02584701
NCBI Taxonomy ID 1447543
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6503
CDS 6435
tRNA 61
pseudo 22
rRNA 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2883
Unknown 1538
Cytoplasmic Membrane 1444
Outer Membrane 173
Periplasmic 172
Unknown (This protein may have multiple localization sites) 150
Extracellular 75
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

82 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF