Pseudomonas aeruginosa BWHPSA041

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA041
Species Pseudomonas aeruginosa
Strain BWHPSA041
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA041
Annotated Genes 6427
Partial Genes 74
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source wound
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-03-13T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 277
guaA
9		 mutL
11		 ppsA
5		 trpE
2		 acsA
39		 aroE
5		 nuoD
27
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000520375.1
Assembly Status latest
Scaffolds 12
Contigs 28
Contig N50 468727
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360705
NCBI Taxonomy ID 1402533
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6397
CDS 6320
tRNA 64
pseudo 30
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2790
Cytoplasmic Membrane 1363
Periplasmic 177
Outer Membrane 167
Extracellular 80
Unknown 1582
Unknown (This protein may have multiple localization sites) 161
Flagellar 17
Fimbrial 4
T3SS 4

Replicons

12 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF