Pseudomonas aeruginosa BWHPSA045

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA045
Species Pseudomonas aeruginosa
Strain BWHPSA045
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA045
Annotated Genes 6608
Partial Genes 82
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source sputum
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-03-13T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 395
trpE
1		 aroE
5		 mutL
1		 guaA
1		 ppsA
12		 acsA
6		 nuoD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000520295.1
Assembly Status latest
Scaffolds 5
Contigs 30
Contig N50 541200
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360709
NCBI Taxonomy ID 1402537
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6579
CDS 6497
tRNA 67
pseudo 29
rRNA 12
ncRNA 3

Subcellular Localization

Localization Count
Cytoplasmic 2877
Unknown 1642
Cytoplasmic Membrane 1402
Periplasmic 174
Outer Membrane 167
Unknown (This protein may have multiple localization sites) 153
Extracellular 82
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF