Pseudomonas aeruginosa BWHPSA046

Strain Overview
Organism Name Pseudomonas aeruginosa BWHPSA046
Species Pseudomonas aeruginosa
Strain BWHPSA046
Description/Title Generic sample from Pseudomonas aeruginosa BWHPSA046
Annotated Genes 6397
Partial Genes 54
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source broncho-alveolar lavage
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-03-13T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 390
mutL
3		 acsA
39		 guaA
1		 trpE
56		 aroE
5		 ppsA
46		 nuoD
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000520275.1
Assembly Status latest
Scaffolds 10
Contigs 22
Contig N50 714321
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360710
NCBI Taxonomy ID 1402538
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6357
CDS 6274
tRNA 67
pseudo 40
rRNA 14
ncRNA 2

Subcellular Localization

Localization Count
Cytoplasmic 2783
Cytoplasmic Membrane 1393
Periplasmic 172
Outer Membrane 170
Extracellular 77
Unknown 1526
Unknown (This protein may have multiple localization sites) 153
Flagellar 20
Fimbrial 8
T3SS 4

Replicons

10 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF