Pseudomonas aeruginosa Z61

Strain Overview
Organism Name Pseudomonas aeruginosa Z61
Species Pseudomonas aeruginosa
Strain Z61
Description/Title Generic sample from Pseudomonas aeruginosa Z61
Annotated Genes 5979
Partial Genes 64
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name USA
Isolation Source unknown
Sample Provider
Name Susanna Hamilton
E-mail suhamil@broadinstitute.org
Institution Broad Institute
Date Collected 2013-03-13T00:00:00

MLST Data

Database Scheme Sequence Type Alleles
PubMLST paeruginosa 244
nuoD
14		 guaA
12		 acsA
17		 aroE
5		 trpE
7		 mutL
3		 ppsA
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000520215.1
Assembly Status latest
Scaffolds 5
Contigs 43
Contig N50 461579
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02360713
NCBI Taxonomy ID 1402541
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5950
CDS 5864
tRNA 67
pseudo 29
rRNA 18
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2663
Cytoplasmic Membrane 1331
Periplasmic 172
Outer Membrane 165
Extracellular 74
Unknown 1308
Unknown (This protein may have multiple localization sites) 151
Flagellar 17
Fimbrial 7
T3SS 4

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF