| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas aeruginosa NCGM2.S1 |
| Species | Pseudomonas aeruginosa |
| Strain | NCGM2.S1 |
| Description/Title | Generic sample from Pseudomonas aeruginosa NCGM2.S1 |
| Annotated Genes | 6274 |
| Partial Genes | 22 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Host Species Disease | urinary tract infection |
| Geographic Location | |
|---|---|
| Location Name | Japan: Miyagi Prefecture |
| Sample Provider | |
|---|---|
| Name | |
| Institution | DDBJ |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | paeruginosa | 235 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Gapless Chromosome |
| Percent GC | 66.1 |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMD00061003 |
| NCBI Taxonomy ID | 1089456 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas aeruginosa NCGM2.S1 DNA, complete genome. |
| Feature | Count |
|---|---|
| gene | 6220 |
| CDS | 6140 |
| tRNA | 67 |
| pseudo | 54 |
| rRNA | 12 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2757 |
| Cytoplasmic Membrane | 1350 |
| Periplasmic | 178 |
| Outer Membrane | 165 |
| Extracellular | 72 |
| Unknown | 1469 |
| Unknown (This protein may have multiple localization sites) | 156 |
| Flagellar | 17 |
| Fimbrial | 4 |
| T3SS | 4 |
| Outer Membrane Vesicle | 10 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas aeruginosa NCGM2.S1 DNA, complete genome. | 6764661 bp | 66.1% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |