This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Pseudomonas aeruginosa 1046_PAER | GCF_001060185.1 latest |
337 | Contig | 6038 (314) | SAMN03197012 | human | USA: WA | University of Washington |
Strain Details
|
|||
Pseudomonas aeruginosa 105 | GCF_004351305.1 latest |
- | Scaffold | 6509 (1187) | SAMN10743754 | infection | hospital | Italy: Trento | University of Trento |
Strain Details
|
||
Pseudomonas aeruginosa 105/4 | GCF_022552495.1 latest |
- | Scaffold | 5988 (156) | SAMN23763303 | Russia: Samara | 200 (paeruginosa) | Pirogov Russian National Research Medical University |
Strain Details
|
|||
Pseudomonas aeruginosa 105738 | GCF_001601595.1 latest |
139 | Scaffold | 6126 (165) | SAMN03076167 | human | Infection | 621 (paeruginosa) | Miami University |
Strain Details
|
||
Pseudomonas aeruginosa 105777 | GCF_001560865.1 latest |
106 | Scaffold | 6892 (122) | SAMN03076164 | human | infection | 1419 (paeruginosa) | Miami University |
Strain Details
|
||
Pseudomonas aeruginosa 105819 | GCF_001601745.1 latest |
67 | Scaffold | 6602 (84) | SAMN03076165 | human | infection | 3045 (paeruginosa) | Miami University |
Strain Details
|
||
Pseudomonas aeruginosa 105857 | GCF_001601665.1 latest |
96 | Scaffold | 6471 (108) | SAMN03076166 | human | infection | 244 (paeruginosa) | Miami University |
Strain Details
|
||
Pseudomonas aeruginosa 105880 | GCF_001601585.1 latest |
90 | Scaffold | 6396 (94) | SAMN03069734 | human | infection | 1284 (paeruginosa) | Miami University |
Strain Details
|
||
Pseudomonas aeruginosa 106 | GCF_004351225.1 latest |
- | Scaffold | 5573 (2224) | SAMN10743755 | infection | hospital | Italy: Trento | University of Trento |
Strain Details
|
||
Pseudomonas aeruginosa 107 | GCF_004351215.1 latest |
- | Scaffold | 5893 (2754) | SAMN10743756 | infection | hospital | Italy: Trento | University of Trento |
Strain Details
|
||
Pseudomonas aeruginosa 1079_PAER | GCF_001061875.1 latest |
459 | Contig | 6102 (428) | SAMN03197042 | human | USA: WA | 1596 (paeruginosa) | University of Washington |
Strain Details
|
||
Pseudomonas aeruginosa 1086_PAER | GCF_001061895.1 latest |
371 | Scaffold | 6056 (316) | SAMN03197049 | human | USA: WA | 1596 (paeruginosa) | University of Washington |
Strain Details
|
||
Pseudomonas aeruginosa 1090 | GCF_003840155.1 latest |
- | Contig | 6121 (89) | SAMN07423899 | skin lesion | United Kingdom | University Laval |
Strain Details
|
|||
Pseudomonas aeruginosa 1098 | GCF_003840225.1 latest |
- | Contig | 6768 (175) | SAMN07423897 | vaginal mucosa | United Kingdom | 313 (paeruginosa) | University Laval |
Strain Details
|
||
Pseudomonas aeruginosa 11 - Assembly GCF_004370925.1 | GCF_004370925.1 latest |
- | Contig | 6058 (80) | SAMN10478399 | human | cystic fibrosis | sputum | Canada: Chicoutimi | 919 (paeruginosa) | University Laval |
Strain Details
|
Pseudomonas aeruginosa 11 - Assembly GCF_004796215.1 | GCF_004796215.1 latest |
- | Scaffold | 5689 (1378) | SAMN10743666 | infection | hospital | Italy: Trento | University of Trento |
Strain Details
|
||
Pseudomonas aeruginosa 110 | GCF_004351205.1 latest |
- | Scaffold | 6369 (1052) | SAMN10743758 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
Strain Details
|
|
Pseudomonas aeruginosa 110238627 | GCF_004370405.1 latest |
- | Contig | 6676 (192) | SAMN10478374 | human | cystic fibrosis | sputum | Canada: Rouyn-Noranda | 155 (paeruginosa) | University Laval |
Strain Details
|
Pseudomonas aeruginosa 1105_S40 | GCF_021061105.1 latest |
- | Contig | 6473 (268) | SAMN20752065 | pneumonia | Spain | 235 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
|
||
Pseudomonas aeruginosa 11112 | GCF_013620525.1 latest |
- | Contig | 5959 (167) | SAMN14453405 | lung | United Kingdom | 146 (paeruginosa) | University of Oxford |
Strain Details
|