This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 207, isolate 207 | GCF_902633025.1 latest |
- | Contig | 5775 (104) | SAMEA6109556 | rectal swab | 3309 (paeruginosa) | EBI |
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Pseudomonas aeruginosa 207WW | GCF_025459465.1 latest |
- | Contig | 6235 (151) | SAMN28578947 | wastewater | Romania: Bucharest | 233 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
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Pseudomonas aeruginosa 208 | GCF_016836645.1 latest |
- | Scaffold | 6479 (165) | SAMN17723433 | Bladder-outlet obstruction with Vesicoureteral reflux | India: Puttaparthi, Urology Ward | 654 (paeruginosa) | Sri Sathya Sai Institute of Higher Learning |
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Pseudomonas aeruginosa 208WW | GCF_025459485.1 latest |
- | Contig | 6223 (230) | SAMN28578948 | wastewater | Romania: Bucharest | 357 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
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Pseudomonas aeruginosa 209, isolate 209 | GCF_902633015.1 latest |
- | Contig | 5905 (209) | SAMEA6109557 | throat swab | 2634 (paeruginosa) | EBI |
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Pseudomonas aeruginosa 209WW | GCF_025456545.1 latest |
- | Contig | 6219 (201) | SAMN28578949 | wastewater | Romania: Bucharest | 357 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
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Pseudomonas aeruginosa 20CFBRPA | GCF_003973795.1 latest |
- | Contig | 5972 (115) | SAMN10478572 | missing | missing | 162 (paeruginosa) | University Laval |
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Pseudomonas aeruginosa 21 | GCF_030024705.1 latest |
- | Scaffold | 6416 (454) | SAMN34372906 | Nigeria | 773 (paeruginosa) | Cepheid |
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Pseudomonas aeruginosa 21 - Assembly GCF_004351125.1 | GCF_004351125.1 latest |
- | Scaffold | 6206 (507) | SAMN10743675 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 21 - Assembly GCF_004369935.1 | GCF_004369935.1 latest |
- | Contig | 5954 (76) | SAMN10478410 | human | cystic fibrosis | sputum | Canada: Chicoutimi | University Laval |
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Pseudomonas aeruginosa 210CS | GCF_025456525.1 latest |
- | Contig | 6479 (140) | SAMN28578950 | missing | Romania: Bucharest | 395 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
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Pseudomonas aeruginosa 2110128687 | GCF_018440405.1 latest |
- | Scaffold | 6052 (192) | SAMN17371772 | not determined | urine | Germany | Justus-Liebig-University Giessen |
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Pseudomonas aeruginosa 2110129324 | GCF_018440375.1 latest |
- | Scaffold | 6296 (211) | SAMN17371773 | not determined | Tracheal secretions | Germany | 348 (paeruginosa) | Justus-Liebig-University Giessen |
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Pseudomonas aeruginosa 21107 | GCF_009830185.1 latest |
- | Contig | 5852 (88) | SAMN13158036 | Cystic fibrosis | sputum | Brazil: Rio de Janeiro | 2744 (paeruginosa) | Universidade do estado do Rio de Janeiro |
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Pseudomonas aeruginosa 21113 | GCF_009830205.1 latest |
- | Contig | 5907 (81) | SAMN13159202 | Cystic fibrosis | sputum | Brazil: Rio de Janeiro | 2744 (paeruginosa) | Universidade do Estado do Rio de Janeiro |
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Pseudomonas aeruginosa 21114 | GCF_009830175.1 latest |
- | Contig | 5912 (76) | SAMN13159203 | Cystic fibrosis | sputum | Brazil: Rio de Janeiro | 2744 (paeruginosa) | Universidade do Estado do Rio de Janeiro |
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Pseudomonas aeruginosa 21167 | GCF_009830195.1 latest |
- | Contig | 5844 (87) | SAMN13159397 | Cystic fibrosis | sputum | Brazil: Rio de Janeiro | 2744 (paeruginosa) | Universidade do Estado do Rio de Janeiro |
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Pseudomonas aeruginosa 21168 | GCF_009830215.1 latest |
- | Contig | 5916 (73) | SAMN13159398 | Cystic fibrosis | sputum | Brazil: Rio de Janeiro | 2744 (paeruginosa) | Universidade do Estado do Rio de Janeiro |
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Pseudomonas aeruginosa 21169 | GCF_009830275.1 latest |
- | Contig | 5857 (80) | SAMN13159401 | Cystic fibrosis | sputum | Brazil: Rio de Janeiro | 2744 (paeruginosa) | Universidade do Estado do Rio de Janeiro |
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Pseudomonas aeruginosa 211BR | GCF_003834135.1 latest |
- | Contig | 6419 (134) | SAMN07424211 | Brazil | 277 (paeruginosa) | University Laval |
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