This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 08_0034 | GCF_028435805.1 latest |
- | Contig | 6637 (373) | SAMN18869636 | Cystic Fibrosis | sputum | Spain: Santander | 111 (paeruginosa) | ITACYL |
Strain Details
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Pseudomonas aeruginosa 09107 | GCF_013285025.1 latest |
- | Scaffold | 6410 (176) | SAMN15010099 | unknown | Unknown | France: Paris | 233 (paeruginosa) | University Hospital of Besancon |
Strain Details
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Pseudomonas aeruginosa 095M0019 | GCF_020640795.1 latest |
- | Scaffold | 6402 (214) | SAMN22048344 | bacteremia | blood | unknown | 111 (paeruginosa) | OHSU |
Strain Details
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Pseudomonas aeruginosa 0C2E isolate RP1 | GCF_001500235.1 latest |
102 | Contig | 6446 (158) | SAMEA2342059 | human | cystic fibrosis | cystic fibrosis airway | 395 (paeruginosa) |
European Bioinformatics Institute
University Laval
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Strain Details
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Pseudomonas aeruginosa 0C4A isolate RP45 | GCF_001500245.1 latest |
65 | Contig | 5795 (106) | SAMN04256133 | human | cystic fibrosis | cystic fibrosis airway | Germany: Hannover | University Laval |
Strain Details
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Pseudomonas aeruginosa 0C4A, isolate 679 | GCF_003698425.1 latest |
- | Contig | 6036 (90) | SAMN05226609 | Poland: Wroclaw | 198 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 1 | GCF_004370185.1 latest |
- | Scaffold | 5986 (82) | SAMN10478389 | human | cystic fibrosis | sputum | Canada: Chicoutimi | 293 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 1-13 | GCF_015317885.1 latest |
- | Contig | 6387 (505) | SAMN14776823 | Infection | Intra-abdominal infection | Portugal: Aveiro | 235 (paeruginosa) | Hospital Universitario Ramon y Cajal (IRYCIS) |
Strain Details
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Pseudomonas aeruginosa 10 - Assembly GCF_004351245.1 | GCF_004351245.1 latest |
- | Contig | 5909 (1195) | SAMN10743665 | infection | hospital | Italy: Trento | 189 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 10 - Assembly GCF_004370105.1 | GCF_004370105.1 latest |
- | Contig | 5866 (110) | SAMN10478398 | human | cystic fibrosis | sputum | Canada: Chicoutimi | 2834 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 10-58 | GCF_015317915.1 latest |
- | Contig | 6435 (485) | SAMN14776820 | Infection | Low respiratory tract infection | Portugal: Porto | 244 (paeruginosa) | Hospital Universitario Ramon y Cajal (IRYCIS) |
Strain Details
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Pseudomonas aeruginosa 101 - Assembly GCF_004350875.1 | GCF_004350875.1 latest |
- | Contig | 6094 (599) | SAMN10743751 | infection | hospital | Italy: Trento | 1567 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 101 - Assembly GCF_021044445.1 | GCF_021044445.1 latest |
- | Scaffold | 5798 (46) | SAMN21907132 | missing | Sweden | 1094 (paeruginosa) | Swedish University of Agricultural Sciences |
Strain Details
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Pseudomonas aeruginosa 102 | GCF_004351295.1 latest |
- | Scaffold | 6337 (1368) | SAMN10743752 | infection | hospital | Italy: Trento | 175 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 10226 | GCF_022424105.1 latest |
- | Contig | 6428 (246) | SAMN21357977 | Not collected | blood | Brazil | Universidade Federal de Sao Paulo |
Strain Details
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Pseudomonas aeruginosa 10262 | GCF_013620565.1 latest |
- | Contig | 5943 (167) | SAMN14453403 | lung | United Kingdom | 146 (paeruginosa) | University of Oxford |
Strain Details
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Pseudomonas aeruginosa 10333 | GCF_013620545.1 latest |
- | Contig | 6004 (167) | SAMN14453404 | lung | United Kingdom | 146 (paeruginosa) | University of Oxford |
Strain Details
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Pseudomonas aeruginosa 10420 | GCF_020905615.1 latest |
- | Contig | 5854 (114) | SAMN19189631 | Pseudomonas aeruginosa infection | blood | Mexico | 252 (paeruginosa) | UNIVERSIDAD EL BOSQUE |
Strain Details
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Pseudomonas aeruginosa 1042828174-20 | GCF_004370505.1 latest |
- | Contig | 5865 (394) | SAMN10478367 | human | cystic fibrosis | sputum | Canada: Rouyn-Noranda | 663 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 1042828174-21 | GCF_004370455.1 latest |
- | Contig | 6228 (93) | SAMN10478368 | human | cystic fibrosis | sputum | Canada: Rouyn-Noranda | 845 (paeruginosa) | University Laval |
Strain Details
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