This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 185345 | GCF_019022575.1 latest |
- | Contig | 5930 (157) | SAMN18680952 | Unknown | blood | France: Lyon | 2548 (paeruginosa) | French National Center for Antibiotics Resistance |
Strain Details
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Pseudomonas aeruginosa 185374 | GCF_019022735.1 latest |
- | Contig | 6343 (181) | SAMN18680953 | Unknown | blood | France: Saintes | 244 (paeruginosa) | French National Center for Antibiotics Resistance |
Strain Details
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Pseudomonas aeruginosa 185385 | GCF_013284855.1 latest |
- | Scaffold | 6266 (107) | SAMN15010107 | unknown | Unknown | France: Besancon | 233 (paeruginosa) | University Hospital of Besancon |
Strain Details
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Pseudomonas aeruginosa 185819 | GCF_019022745.1 latest |
- | Contig | 5899 (234) | SAMN18680954 | Unknown | Expectoration | France: Saint Brieuc | 198 (paeruginosa) | French National Center for Antibiotics Resistance |
Strain Details
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Pseudomonas aeruginosa 1889_S27 | GCF_021061005.1 latest |
- | Contig | 6553 (269) | SAMN20752071 | blood | Spain | 175 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
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Pseudomonas aeruginosa 189/1 | GCF_022552435.1 latest |
- | Scaffold | 6029 (142) | SAMN23763310 | Russia: Samara | 274 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 18A | GCF_000341565.1 latest |
179 | Contig | 5742 (301) | SAMEA2272507 | human | cystic fibrosis | sputum | 788 (paeruginosa) |
European Bioinformatics Institute
UNSW
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Strain Details
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Pseudomonas aeruginosa 18G | GCF_004373595.1 latest |
- | Scaffold | 6072 (84) | SAMN10478256 | sandy soil contaminated with hydrocarbons for 50 years | Canada: L Assomption | University Laval |
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Pseudomonas aeruginosa 19 - Assembly GCF_004351135.1 | GCF_004351135.1 latest |
- | Scaffold | 6483 (1314) | SAMN10743673 | infection | hospital | Italy: Trento | 308 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 19 - Assembly GCF_004370865.1 | GCF_004370865.1 latest |
- | Contig | 6259 (111) | SAMN10478408 | human | cystic fibrosis | sputum | Canada: Chicoutimi | 683 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 19-026975 | GCF_004795655.1 latest |
- | Contig | 6923 (284) | SAMN11380140 | MISSING | MISSING | USA:California | 111 (paeruginosa) | Walter Reed Army Institute of Research |
Strain Details
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Pseudomonas aeruginosa 19-028480 | GCF_004795665.1 latest |
- | Contig | 6914 (203) | SAMN11380141 | MISSING | MISSING | USA:California | 111 (paeruginosa) | Walter Reed Army Institute of Research |
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Pseudomonas aeruginosa 19-032124 | GCF_004795645.1 latest |
- | Contig | 6791 (192) | SAMN11380142 | MISSING | MISSING | USA:California | 111 (paeruginosa) | Walter Reed Army Institute of Research |
Strain Details
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Pseudomonas aeruginosa 1903031130 | GCF_016745195.1 latest |
- | Complete Genome | 6355 (52) | SAMN15834152 | pneumonia | sputum | China: Henan | 235 (paeruginosa) | Beijing Institute of Microbiology and Epidemiology |
Strain Details
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Pseudomonas aeruginosa 191/1 | GCF_022552375.1 latest |
- | Scaffold | 6398 (154) | SAMN23763311 | Russia: Samara | 252 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 192/4 | GCF_022552295.1 latest |
- | Scaffold | 6284 (157) | SAMN23763312 | Russia: Samara | 319 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 192S190811BSL_PA1 | GCF_004375535.1 latest |
- | Contig | 5821 (76) | SAMN10478154 | human | cystic fibrosis | sputum | Canada: Montreal | University Laval |
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Pseudomonas aeruginosa 192S190811BSL_PA2 | GCF_004375275.1 latest |
- | Contig | 5850 (83) | SAMN10478155 | human | cystic fibrosis | sputum | Canada: Montreal | University Laval |
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Pseudomonas aeruginosa 192S190811BSL_PA3 | GCF_004375265.1 latest |
- | Contig | 5843 (91) | SAMN10478156 | human | cystic fibrosis | sputum | Canada: Montreal | University Laval |
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Pseudomonas aeruginosa 194WW | GCF_025456605.1 latest |
- | Contig | 6733 (203) | SAMN28578941 | wastewater | Romania: Iasi | 640 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
Strain Details
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