This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Pseudomonas aeruginosa 00041437 | GCF_002263455.1 latest |
586 | Contig | 6621 (675) | SAMN07344897 | human | tracheal aspiration | Belgium | 446 (paeruginosa) | Faculte de Medecine, Universite Paris-Sud |
Strain Details
|
|
Pseudomonas aeruginosa 001-5A | GCF_003835785.1 latest |
- | Contig | 5832 (118) | SAMN07424124 | human | cystic fibrosis | cystic fibrosis patient | New Zealand: Dunedin | 244 (paeruginosa) | University Laval |
Strain Details
|
Pseudomonas aeruginosa 001-5B | GCF_003835325.1 latest |
- | Contig | 5819 (119) | SAMN07424125 | human | cystic fibrosis | cystic fibrosis patient | New Zealand: Dunedin | 244 (paeruginosa) | University Laval |
Strain Details
|
Pseudomonas aeruginosa 001-6 | GCF_003835295.1 latest |
- | Contig | 5808 (112) | SAMN07424126 | human | cystic fibrosis | cystic fibrosis patient | New Zealand: Dunedin | 244 (paeruginosa) | University Laval |
Strain Details
|
Pseudomonas aeruginosa 007M0003 | GCF_020640875.1 latest |
- | Contig | 6483 (177) | SAMN22048342 | bacteremia | blood | unknown | 446 (paeruginosa) | OHSU |
Strain Details
|
|
Pseudomonas aeruginosa 010-4 | GCF_003835175.1 latest |
- | Contig | 6725 (180) | SAMN07424134 | human | cystic fibrosis | cystic fibrosis patient | New Zealand: Dunedin | University Laval |
Strain Details
|
|
Pseudomonas aeruginosa 014-2A | GCF_003835685.1 latest |
- | Contig | 6148 (141) | SAMN07424136 | human | cystic fibrosis | cystic fibrosis patient | New Zealand: Dunedin | 2548 (paeruginosa) | University Laval |
Strain Details
|
Pseudomonas aeruginosa 014WW | GCF_025456715.1 latest |
- | Contig | 6159 (160) | SAMN28578934 | wastewater | Romania: Bucharest | 357 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
Strain Details
|
||
Pseudomonas aeruginosa 016WW | GCF_025456705.1 latest |
- | Contig | 6214 (229) | SAMN28578935 | wastewater | Romania: Bucharest | 357 (paeruginosa) | Research Institute of University of Bucharest - ICUB |
Strain Details
|
||
Pseudomonas aeruginosa 0201761-1 | GCF_028961985.1 latest |
- | Complete Genome | 6446 (48) | SAMN32964166 | ISS SRV-K | not applicable | 348 (paeruginosa) | NASA |
Strain Details
|
||
Pseudomonas aeruginosa 020MIC | GCF_003835095.1 latest |
- | Contig | 6499 (134) | SAMN07424139 | human | cystic fibrosis | cystic fibrosis patient | New Zealand: Dunedin | 395 (paeruginosa) | University Laval |
Strain Details
|
Pseudomonas aeruginosa 0215_S28 | GCF_021061225.1 latest |
- | Contig | 6162 (243) | SAMN20752062 | pneumonia | Spain | 927 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
|
||
Pseudomonas aeruginosa 0268_S35 | GCF_021061545.1 latest |
- | Contig | 6649 (321) | SAMN20752052 | Intra-abdominal infection | Spain | 2731 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
|
||
Pseudomonas aeruginosa 0504_S17 | GCF_021061065.1 latest |
- | Contig | 6626 (358) | SAMN20752067 | pyelonephritis | Spain | 111 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
|
||
Pseudomonas aeruginosa 0523_S21 | GCF_021061205.1 latest |
- | Contig | 6554 (267) | SAMN20752060 | pneumonia | Spain | 175 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
|
||
Pseudomonas aeruginosa 0613_S9 | GCF_021060445.1 latest |
- | Contig | 6066 (216) | SAMN20752085 | Spain | 560 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
|
|||
Pseudomonas aeruginosa 061M0117 | GCF_020640835.1 latest |
- | Contig | 5796 (119) | SAMN22048411 | bacteremia | blood | unknown | OHSU |
Strain Details
|
||
Pseudomonas aeruginosa 062M0102 | GCF_020640815.1 latest |
- | Contig | 6416 (183) | SAMN22048343 | bacteremia | blood | unknown | 111 (paeruginosa) | OHSU |
Strain Details
|
|
Pseudomonas aeruginosa 0654_S32 | GCF_021061525.1 latest |
- | Contig | 6168 (148) | SAMN20752051 | Intra-abdominal infection | Spain | 108 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
|
||
Pseudomonas aeruginosa 0869_S18 | GCF_021061245.1 latest |
- | Contig | 6605 (311) | SAMN20752058 | pneumonia | Spain | 111 (paeruginosa) | Instituto de Investigacion Sanitaria y Biomedica de Alicante |
Strain Details
|