This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas viridiflava 13_3a_2fr | GCF_016307535.1 latest |
- | Scaffold | 5214 (106) | SAMN16885838 | Greenhouse | Turkey: Antalya | University of Toronto Mississauga |
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Pseudomonas viridiflava 45C2 | GCF_013522975.1 latest |
- | Contig | 4921 (122) | SAMN14085449 | USA:Eugene | Northwestern University |
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Pseudomonas viridiflava A2M176 | GCF_022936465.1 latest |
- | Contig | 5252 (63) | SAMN26870984 | Bing | Chile:Malloa | INIA Rayentue |
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Pseudomonas viridiflava BAV 2572 | GCF_009765495.1 latest |
- | Scaffold | 5364 (86) | SAMN13012101 | Precipitation | USA: Virginia | Virginia Tech |
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Pseudomonas viridiflava CC1582 | GCF_000452505.1 latest |
553 | Scaffold | 5400 (199) | SAMN02471565 | epilithon | France |
University of Arizona
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Pseudomonas viridiflava CDRTc14 | GCF_001716855.1 latest |
38 | Scaffold | 5291 (26) | SAMN05413107 | Lepidium draba | weed growing in a vineyard | Austria: National Park of Illmitz | AIT Austrian Institute of Technology GmbH |
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Pseudomonas viridiflava CFBP 1590 isolate E12-5 | GCF_900184295.1 latest |
- | Complete Genome | 5397 (40) | SAMEA104090973 | diseased cherry tree | EBI |
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Pseudomonas viridiflava CFBP13507 | GCF_005233675.1 latest |
- | Contig | 5176 (104) | SAMN09062491 | Seed | France | INRA |
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Pseudomonas viridiflava CFBP13515 | GCF_005233555.1 latest |
- | Contig | 5164 (114) | SAMN09064882 | Seed | France | INRA |
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Pseudomonas viridiflava CFBP8799 | GCF_014839005.1 latest |
- | Contig | 5332 (135) | SAMN16237943 | Seed | France | INRAE |
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Pseudomonas viridiflava CFBP8802 | GCF_014838925.1 latest |
- | Contig | 5173 (104) | SAMN16238274 | Seed | France | INRAE |
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Pseudomonas viridiflava CH409 | GCF_002406485.1 latest |
80 | Contig | 5216 (70) | SAMN07664227 | thale cress | roots | University of British Columbia |
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Pseudomonas viridiflava DSM 6694 | GCF_001305955.1 latest |
188 | Contig | 5200 (59) | SAMN03103695 | runner bean (Dwarf) | missing | Switzerland | CSIR-Institute of Microbial Technology |
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Pseudomonas viridiflava ICMP 11296 | GCF_003700305.1 latest |
- | Scaffold | 5245 (319) | SAMN03976423 | not collected | New Zealand: Kumeu | University of Toronto |
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Pseudomonas viridiflava ICMP 19473 | GCF_003702045.1 latest |
- | Scaffold | 4922 (124) | SAMN03976365 | not collected | Iran: (Islamic Republic of): Sari, Mazandaran | University of Toronto |
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Pseudomonas viridiflava ICMP 2848 | GCF_001642795.1 latest |
90 | Scaffold | 5209 (50) | SAMN04102828 | Phaseolus vulgaris | Switzerland | New Zealand Institute for Plant & Food research |
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Pseudomonas viridiflava ICMP 3272 | GCF_003700335.1 latest |
- | Scaffold | 5260 (216) | SAMN03976434 | not collected | New Zealand: Riverhead | University of Toronto |
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Pseudomonas viridiflava ICMP 8820 | GCF_002723575.1 latest |
41 | Contig | 5160 (153) | SAMN04092610 | New Zealand Institute for Plant & Food research |
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Pseudomonas viridiflava ICMP2848 | GCF_001401215.1 latest |
286 | Scaffold | 5180 (164) | SAMN03976266 | kidney bean | not collected | Switzerland | University of Toronto |
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Pseudomonas viridiflava isolate p1.A10 | GCF_900582605.1 latest |
- | Contig | 5337 (152) | SAMEA104471999 |
EBI
Max Planck Institute for Developmental Biology
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