This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas umsongensis xwS5 | GCF_013393265.1 latest |
- | Scaffold | 6052 (202) | SAMN09303050 | not collected | Hbtcm.edu.cn |
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Pseudomonas urethralis BML-PP042 - Assembly GCF_013373915.1 | GCF_013373915.1 latest |
- | Contig | 5749 (483) | SAMD00229129 | Japan:Tokyo | Department of Microbiology, Juntendo University School of Medicine |
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Pseudomonas urethralis BML-PP042 - Assembly GCF_021602465.1 | GCF_021602465.1 latest |
- | Contig | 5577 (96) | SAMD00422635 | Japan:Saitama, Kawagoe | Department of Microbiology, Juntendo University School of Medicine |
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Pseudomonas urmiensis SWRI10 - Assembly GCF_014268815.2 | GCF_014268815.2 latest |
- | Contig | 5155 (86) | SAMN15248331 | Wheat rhizosphere | Iran: West Azerbaijan | KU Leuven |
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Pseudomonas uvaldensis 20TX0172 | GCF_021271205.1 latest |
- | Contig | 5258 (103) | SAMN21582561 | USA: Texas | Texas A & M University |
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Pseudomonas vancouverensis BS3656 | GCF_900105825.1 latest |
1 | Chromosome | 5855 (38) | SAMN05216558 | missing | missing | DOE Joint Genome Institute |
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Pseudomonas vancouverensis CCUG 49675 | GCF_008801375.1 latest |
- | Contig | 5958 (320) | SAMN12697595 | forest soil | Canada: Vancouver | University of Gothenburg - CCUG |
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Pseudomonas vancouverensis Dha-51 | GCF_004348895.1 latest |
- | Contig | 5839 (111) | SAMN10506519 | forest soil | Canada: University of British Columbia Endowment Lands, Vancouver, BC | University of British Columbia |
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Pseudomonas vanderleydeniana RW8P3 - Assembly GCF_014268755.2 | GCF_014268755.2 latest |
- | Complete Genome | 6269 (68) | SAMN15248333 | Rhizoplane rice | Sri Lanka: Kurunegala | KU Leuven |
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Pseudomonas veronii 1929 | GCF_029269225.1 latest |
- | Contig | 5976 (277) | SAMN33601517 | Oil sands tailings pond | Canada: Alberta | Universite Laval |
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Pseudomonas veronii 1YB2 | GCF_000982395.1 latest |
115 | Contig | 6986 (208) | SAMN02692653 | contaminated soil | Czech Republic: Hradcany |
Bacterial Abiotic Stress and Survival Improvement Network
Helmholtz Centre for Infection Research
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Pseudomonas veronii 1YdBTEX2 | GCF_000350565.1 latest |
63 | Contig | 5883 (35) | SAMN02469887 | contaminated soil | Czech Republic |
Helmholtz Centre for Infection Research
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Pseudomonas veronii A-6-5 | GCF_003970115.1 latest |
- | Scaffold | 6640 (283) | SAMN10593019 | Groundwater sampled from observation wells of deep repository of liquid radioactive waste | Russia: Tomsk region, Seversk | Research Center of Biotechnology RAS |
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Pseudomonas veronii B560 | GCF_025421655.1 latest |
- | Contig | 6670 (262) | SAMN30644902 | soil | Germany | Karlsruhe Institute of Technology |
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Pseudomonas veronii DM15 | GCF_012274305.1 latest |
- | Contig | 5844 (153) | SAMN14342341 | soil | China:Zhejiang | Institute of Subtropical Agriculture, Chinese Academy of Sciences. |
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Pseudomonas veronii DSM 11331 | GCF_001439695.1 latest |
95 | Contig | 6117 (100) | SAMN03328800 | mineral water | France: Contrexeville, Pavillon Spring | Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM |
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Pseudomonas veronii DSM 16272 | GCF_012985365.1 latest |
- | Contig | 7118 (322) | SAMN14381991 | sediment | Netherlands | Technische Universitaet Muenchen |
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Pseudomonas veronii G2 | GCF_021233455.1 latest |
- | Complete Genome | 6259 (154) | SAMN23966549 | former landfill site for plastics | Germany:State of Brandenburg,Potsdam-Mittelmark, NIEMGK | BAM Bundesanstalt fuer Materialforschung und -pruefung |
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Pseudomonas veronii IB04 | GCF_016406005.1 latest |
- | Scaffold | 6316 (252) | SAMN16411057 | wastewater | Denmark:Kongens Lyngby | Technical University of Denmark |
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Pseudomonas veronii isolate 11V4441 | GCF_903970695.1 latest |
- | Chromosome | 6427 (200) | SAMEA6819934 | EBI |
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