This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 131709 | GCF_013284985.1 latest |
- | Scaffold | 6501 (328) | SAMN15010101 | unknown | Bones | France: Toulouse | 233 (paeruginosa) | University Hospital of Besancon |
Strain Details
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Pseudomonas aeruginosa 132 | GCF_004350275.1 latest |
- | Scaffold | 6494 (772) | SAMN10743779 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 1324_PAER | GCF_001061585.1 latest |
1090 | Scaffold | 7379 (1235) | SAMN03197304 | human | USA: WA | 253 (paeruginosa) | University of Washington |
Strain Details
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Pseudomonas aeruginosa 133 | GCF_004350615.1 latest |
- | Scaffold | 5960 (1059) | SAMN10743780 | infection | hospital | Italy: Trento | University of Trento |
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Pseudomonas aeruginosa 1334/14 | GCF_004193735.1 latest |
- | Complete Genome | 6519 (86) | SAMN10880118 | conjunctiva infection | eye | Poland | 234 (paeruginosa) | National Medicines Institute |
Strain Details
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Pseudomonas aeruginosa 1336_PAER | GCF_001076225.1 latest |
152 | Scaffold | 5847 (145) | SAMN03197317 | human | USA: WA | 2653 (paeruginosa) | University of Washington |
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Pseudomonas aeruginosa 134 | GCF_004350265.1 latest |
- | Scaffold | 5755 (873) | SAMN10743781 | infection | hospital | Italy: Trento | 1704 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 135 | GCF_004350255.1 latest |
- | Scaffold | 6561 (744) | SAMN10743782 | infection | hospital | Italy: Trento | 175 (paeruginosa) | University of Trento |
Strain Details
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Pseudomonas aeruginosa 135/3 | GCF_022552485.1 latest |
- | Scaffold | 5772 (114) | SAMN23763306 | Russia: Samara | 3005 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 136S260811BSL_PA1 | GCF_004375385.1 latest |
- | Contig | 5892 (65) | SAMN10478146 | human | cystic fibrosis | sputum | Canada: Montreal | 514 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 136S260811BSL_PA2 | GCF_004375405.1 latest |
- | Contig | 5888 (70) | SAMN10478147 | human | cystic fibrosis | sputum | Canada: Montreal | 514 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 136S260811BSL_PA3 | GCF_004375585.1 latest |
- | Contig | 5901 (65) | SAMN10478148 | human | cystic fibrosis | sputum | Canada: Montreal | 514 (paeruginosa) | University Laval |
Strain Details
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Pseudomonas aeruginosa 138 | GCF_004350215.1 latest |
- | Scaffold | 6114 (1703) | SAMN10743784 | infection | hospital | Italy: Trento | 313 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 139 | GCF_004350565.1 latest |
- | Contig | 6465 (207) | SAMN10743785 | infection | hospital | Italy: Trento | 235 (paeruginosa) | University of Trento |
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Pseudomonas aeruginosa 139124 | GCF_013620065.1 latest |
- | Contig | 5904 (169) | SAMN14453428 | lung | United Kingdom | University of Oxford |
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Pseudomonas aeruginosa 139125 | GCF_013620005.1 latest |
- | Contig | 5926 (175) | SAMN14453429 | lung | United Kingdom | 146 (paeruginosa) | University of Oxford |
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Pseudomonas aeruginosa 13_0950 | GCF_028435695.1 latest |
- | Contig | 5934 (265) | SAMN18869649 | Cystic Fibrosis | sputum | Spain: Santander | 253 (paeruginosa) | ITACYL |
Strain Details
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Pseudomonas aeruginosa 14-0035 | GCF_028435485.1 latest |
- | Contig | 6430 (258) | SAMN18869700 | Non-Cystic Fibrosis Bronchiectasis | sputum | Spain: Santander | 313 (paeruginosa) | ITACYL |
Strain Details
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Pseudomonas aeruginosa 14-0116 | GCF_028435445.1 latest |
- | Contig | 6757 (323) | SAMN18869698 | Non-Cystic Fibrosis Bronchiectasis | bronchoalveolar lavage | Spain: Santander | 111 (paeruginosa) | ITACYL |
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Pseudomonas aeruginosa 14-0421 | GCF_028435585.1 latest |
- | Contig | 5965 (141) | SAMN18869661 | Cystic Fibrosis | sputum | Spain: Santander | 2238 (paeruginosa) | ITACYL |
Strain Details
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