This is a list of Pseudomonas strains for which annotations and sequences can be found in the Pseudomonas Genome Database. For a more comprehensive list of ongoing genome sequencing, transcriptome and epigenomic projects based on what are registered in the NCBI BioProject database, please check out our searchable, user-friendly listing of BioProjects.
By default, strains having completely sequenced genomes and draft genomes are shown, however you can filter the list by using the wide range of criteria below. We plan to expand the search functionality as the number of genomes sequenced grows and metadata standards mature.
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Strain | Assembly | Contigs | Assembly Level | Genes (partial) | BioSample Accession | Host Organism | Host Disease | Isolation Source | Location | MLST | Institution | |
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Pseudomonas aeruginosa 12294 | GCF_020905575.1 latest |
- | Contig | 6630 (285) | SAMN19189667 | Pseudomonas aeruginosa infection | blood | Mexico | 309 (paeruginosa) | UNIVERSIDAD EL BOSQUE |
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Pseudomonas aeruginosa 124/1 | GCF_022552635.1 latest |
- | Scaffold | 5942 (91) | SAMN23763304 | Russia: Samara | 685 (paeruginosa) | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 124/2 | GCF_022552475.1 latest |
- | Contig | 5902 (96) | SAMN23763305 | Russia: Samara | Pirogov Russian National Research Medical University |
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Pseudomonas aeruginosa 1268_PAER | GCF_001060735.1 latest |
217 | Scaffold | 6342 (209) | SAMN03197236 | human | USA: WA | 17 (paeruginosa) | University of Washington |
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Pseudomonas aeruginosa 128 | GCF_004350655.1 latest |
- | Scaffold | 6292 (2052) | SAMN10743775 | infection | hospital | Italy: Trento | University of Trento |
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Pseudomonas aeruginosa 12866 | GCF_013284995.1 latest |
- | Scaffold | 6299 (168) | SAMN15010100 | unknown | Unknown | France: Besancon | 233 (paeruginosa) | University Hospital of Besancon |
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Pseudomonas aeruginosa 128S180412BSL_PA2 | GCF_004375375.1 latest |
- | Contig | 6197 (86) | SAMN10478145 | human | cystic fibrosis | sputum | Canada: Montreal | University Laval |
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Pseudomonas aeruginosa 12939 | GCF_002753655.1 latest |
- | Complete Genome | 6193 (82) | SAMN07831757 | human | 1420 (paeruginosa) | Beijing Institute of Microbiology and Epidemiology |
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Pseudomonas aeruginosa 12_0805 | GCF_028435765.1 latest |
- | Contig | 5985 (301) | SAMN18869641 | Cystic Fibrosis | sputum | Spain: Santander | ITACYL |
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Pseudomonas aeruginosa 12_5984 | GCF_028435745.1 latest |
- | Contig | 6698 (415) | SAMN18869642 | Cystic Fibrosis | Pharyngeal swab | Spain: Santander | 253 (paeruginosa) | ITACYL |
Strain Details
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Pseudomonas aeruginosa 12_6494 | GCF_020102795.1 latest |
- | Contig | 5793 (150) | SAMN15616585 | Cystic fibrosis | tracheal aspirate | Spain: Santander | ITACYL |
Strain Details
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Pseudomonas aeruginosa 13 - Assembly GCF_004351815.1 | GCF_004351815.1 latest |
- | Scaffold | 6222 (534) | SAMN10743668 | infection | hospital | Italy: Trento | University of Trento |
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Pseudomonas aeruginosa 13 - Assembly GCF_004370075.1 | GCF_004370075.1 latest |
- | Contig | 6443 (160) | SAMN10478401 | human | cystic fibrosis | sputum | Canada: Chicoutimi | 253 (paeruginosa) | University Laval |
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Pseudomonas aeruginosa 13-0439 | GCF_028435405.1 latest |
- | Contig | 5917 (227) | SAMN18869705 | Non-Cystic Fibrosis Bronchiectasis | sputum | Spain: Santander | 2050 (paeruginosa) | ITACYL |
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Pseudomonas aeruginosa 13-3150 | GCF_028435425.1 latest |
- | Contig | 6448 (196) | SAMN18869702 | Non-Cystic Fibrosis Bronchiectasis | sputum | Spain: Santander | 17 (paeruginosa) | ITACYL |
Strain Details
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Pseudomonas aeruginosa 13-3298 | GCF_028435515.1 latest |
- | Contig | 6213 (94) | SAMN18869672 | Cystic Fibrosis | sputum | Spain: Santander | 155 (paeruginosa) | ITACYL |
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Pseudomonas aeruginosa 13-4111 | GCF_028435505.1 latest |
- | Contig | 6517 (819) | SAMN18869687 | Non-Cystic Fibrosis Bronchiectasis | sputum | Spain: Santander | 1249 (paeruginosa) | ITACYL |
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Pseudomonas aeruginosa 130 | GCF_002411845.1 latest |
274 | Contig | 6469 (341) | SAMN07692777 | human | Chronic wound infection | wound swab | 234 (paeruginosa) | Norwegian National Advisory Unit on Detection of Antimicrobial Resistance |
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Pseudomonas aeruginosa 130_PAER | GCF_001061475.1 latest |
153 | Scaffold | 6411 (155) | SAMN03197272 | human | USA: WA | University of Washington |
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Pseudomonas aeruginosa 1311 | GCF_003863865.1 latest |
- | Contig | 5930 (236) | SAMN10484661 | human | cystic fibrosis | cystic fibrosis patient | United Kingdom: Scotland, Queen Elizabeth University Hospital Glasgow | 266 (paeruginosa) | University of Aberdeen |
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