Pseudomonas Project PRJNA222322
| Project Title | Genes differentially expressed in Pseudomonas chlororaphis 30-84 SCV |
| Released | |
| Project Database | BioProject |
| Project Accession | PRJNA222322 |
| Organism Name | Pseudomonas chlororaphis subsp. aureofaciens 30-84 |
| Project Description | To better understand transcriptional changes in the SCV, RNA-seq analyses were conducted by comparing a SCV mutant to the wild-type. Transcriptomic profiling identified more than 1000 genes indicating a significant reprograming of gene expression in the SCV mutant. In accordance with observed phenotypes, genes involved in metabolism functions, motility and phenazine production were downregulated; whereas, oxidative stress and iron uptake genes were significantly upregulated. Overall design: A total of 5 samples were analyzed in AB medium + 2% casamino acids, Pseudomonas chlororaphis wild type strain (3 replicates); Pseudomonas chlororaphis SCV mutant (2 replicates). |
| Publication Citation | Pubmed:25416762 |
| Sample Provider Pi Institution | Plant pathology and microbiology, TAMU |
| Sample Provider Pi Email | wdping@gmail.com |
External Links
Biosamples associated with this project
| Link | 5 BioSample(s) |