What's a Pseudomonas Ortholog Group?

In order to generate a more inclusive dataset of Pseudomonas genes mapped to putative in-paralogs and putative orthologs in other Pseudomonas species/strains, we developed a Pseudomonas Orthologous Groups classification system.

To generate ortholog groups, pair-wise DIAMOND searches were run on all genomes in the database to find reciprocal best hits (RBHs) for each gene. These analyses often resulted in multiple candidate genes for RBH status, which were narrowed down by examining the similarity between the query's flanking genes and the hit's flanking genes. If two candidate genes were directly adjacent, they where both accepted as RBHs that involve putative in-parology.

Pairwise intra-genome DIAMOND searches were also performed to acquire in-paralog information (i.e. gene duplications occurring after species divergence). If two genes in one genome were reciprocally more similar to each other than to any gene in the other genomes, the two genes were designated putative in-paralogs. Ortholog groups are built by starting with a seed gene and then adding all genes to which there is a RBH or in-paralog relationship.

Every new gene added to an ortholog group was then treated as a seed gene and the addition process was repeated until all qualifying genes had been added. The result was the development of orthologous groups, specifically generated for Pseudomonas species genomes, which can be used to sort search results.

Pseudomonas Ortholog Group POG004951

507 results were returned for your query
= Popular strains (Ordered by popular strains first, then by strain name, ascending)
Strain Locus Tag Description Same-Strain Members Fragment ?
Pseudomonas aeruginosa Z61 Q054_05813 cardiolipin synthetase
1 member
Pseudomonas alcaliphila 34 D567_RS0107900 cardiolipin synthetase
1 member
Pseudomonas alkylphenolia KL28 PSAKL28_RS26195 cardiolipin synthetase
1 member
Pseudomonas amygdali pv. tabaci ATCC 11528 - Assembly GCF_001006455.1 AAY86_RS22555 cardiolipin synthetase
1 member
Pseudomonas brassicacearum 51MFCVI2.1 PSBVI21_RS0128480 cardiolipin synthetase
1 member
Pseudomonas brassicacearum DF41 CD58_RS28525 cardiolipin synthetase
1 member
Pseudomonas brassicacearum PA1G7 AW28_RS20340 cardiolipin synthetase
1 member
Pseudomonas brassicacearum PP1_210F P908_RS02870 cardiolipin synthetase
1 member
Pseudomonas brassicacearum subsp. brassicacearum NFM421 PSEBR_a5613 cardiolipin synthase
1 member
Pseudomonas chlororaphis EA105 NZ35_RS05920 cardiolipin synthetase
1 member
Pseudomonas chlororaphis HT66 M217_RS0116920 cardiolipin synthetase
1 member
Pseudomonas chlororaphis O6 PchlO6_6262 cardiolipin synthetase
1 member
Pseudomonas chlororaphis PA23 EY04_RS29120 cardiolipin synthetase
1 member
Pseudomonas chlororaphis PCL1606 PCL1606_RS00160 cardiolipin synthetase
1 member
Pseudomonas chlororaphis subsp. aurantiaca JD37 JM49_RS00425 cardiolipin synthetase
1 member
Pseudomonas chlororaphis subsp. aureofaciens 30-84 PCHL3084_RS00450 cardiolipin synthetase
1 member
Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521 PCH03S_RS22685 cardiolipin synthetase
1 member
Pseudomonas chlororaphis UFB2 isolate Soil VM99_RS00070 cardiolipin synthetase
1 member
Pseudomonas chlororaphis YL-1 P637_RS0124790 cardiolipin synthetase
1 member
Pseudomonas cichorii JBC1 BH81_RS25555 cardiolipin synthetase
1 member