What's a Pseudomonas Ortholog Group?

In order to generate a more inclusive dataset of Pseudomonas genes mapped to putative in-paralogs and putative orthologs in other Pseudomonas species/strains, we developed a Pseudomonas Orthologous Groups classification system.

To generate ortholog groups, pair-wise DIAMOND searches were run on all genomes in the database to find reciprocal best hits (RBHs) for each gene. These analyses often resulted in multiple candidate genes for RBH status, which were narrowed down by examining the similarity between the query's flanking genes and the hit's flanking genes. If two candidate genes were directly adjacent, they where both accepted as RBHs that involve putative in-parology.

Pairwise intra-genome DIAMOND searches were also performed to acquire in-paralog information (i.e. gene duplications occurring after species divergence). If two genes in one genome were reciprocally more similar to each other than to any gene in the other genomes, the two genes were designated putative in-paralogs. Ortholog groups are built by starting with a seed gene and then adding all genes to which there is a RBH or in-paralog relationship.

Every new gene added to an ortholog group was then treated as a seed gene and the addition process was repeated until all qualifying genes had been added. The result was the development of orthologous groups, specifically generated for Pseudomonas species genomes, which can be used to sort search results.

Pseudomonas Ortholog Group POG001651

299 results were returned for your query
= Popular strains (Ordered by popular strains first, then by strain name, ascending)
Strain Locus Tag Description Same-Strain Members Fragment ?
Pseudomonas aeruginosa BL01 Q055_00885 hypothetical protein
1 member
Pseudomonas aeruginosa BL02 Q056_03951 hypothetical protein
1 member
Pseudomonas aeruginosa BL03 Q057_02060 hypothetical protein
1 member
Pseudomonas aeruginosa BL04 Q058_00174 hypothetical protein
1 member
Pseudomonas aeruginosa BL05 Q059_00267 hypothetical protein
1 member
Pseudomonas aeruginosa BL06 Q060_00254 hypothetical protein
1 member
Pseudomonas aeruginosa BL07 Q061_03307 hypothetical protein
1 member
Pseudomonas aeruginosa BL08 Q062_00949 hypothetical protein
1 member
Pseudomonas aeruginosa BL09 Q063_02081 hypothetical protein
1 member
Pseudomonas aeruginosa BL10 Q064_00928 hypothetical protein
1 member
Pseudomonas aeruginosa BL11 Q065_01033 hypothetical protein
1 member
Pseudomonas aeruginosa BL12 Q066_00171 hypothetical protein
1 member
Pseudomonas aeruginosa BL13 Q067_00956 hypothetical protein
1 member
Pseudomonas aeruginosa BL14 Q068_00259 hypothetical protein
1 member
Pseudomonas aeruginosa BL15 Q069_00275 hypothetical protein
1 member
Pseudomonas aeruginosa BL16 Q070_00085 hypothetical protein
1 member
Pseudomonas aeruginosa BL17 Q071_00913 hypothetical protein
1 member
Pseudomonas aeruginosa BL18 Q072_00257 hypothetical protein
1 member
Pseudomonas aeruginosa BL19 Q073_00254 hypothetical protein
1 member
Pseudomonas aeruginosa BL20 Q074_00956 hypothetical protein
1 member